The water softener in my house failed and I now have tiny beads all through my system. I have poor water pressure with some outlets barely dribbling and these beads coming out. Is there a way to flush this stuff out of my system?
Sounds like the riser pipe is broken. Your softener will need to be rebedded (emptied, and then refilled, and obviously a new riser pipe installed).
To clear out your system, really the only way is the obvious way: flush it out with water. First off, make sure your softener is bypassed until it's fixed, so you don't add to the problem.
Take off the aerators, shower heads, and anything else that has a screen or filter in it, and run water until you get everything out.
There's a chance with some valves you could get something caught in them, so if you still notice a reduced flow or leak from a particular tap, you'll have to take apart the valve. How to do this varies depending on each particular valve, but you can find help online (try searching for "replace valve cartridge in ") or ask another question here.
Hot water heater
The hot water heater is a bit trickier, since you really can't get enough flow through the tank to "flush" it. The only way is to drain the tank: