What you see as messy, I see as surprisingly realistic, just imitating a different species than your third picture.
If you really, really want the yellow tone of the second picture, as if the wood had been sealed with an oil based finish rather than a water based one, you might in fact be able to get away with doing exactly that, cleaning thoroughly for good adhesion and applying an unnecessary oil-based varnish as a topcoat. I strongly suggest investigating this first to see if other have tried it and had it work, then getting a matching tile and trying it to see if you like the result, then testing in an inconspicuous corner of possible before attempting the whole thing. If you don't like the test, it might be possible to fake the color with a suitable transparent tint to shift it a bit and test again.
But this would be hard to undo if you get it wrong.
I have both whitish and yellowish oak floors in my house, depending on who finished them when. I like both. But they are what you would call "messy"; real wood has variations from board to board. Admittedly, my floor uses longer and narrower pieces than your tiles, so there are fewer end-to-end transitions.
Personally, I would bet that after a year in the house, with furniture over it, what you have now will look Just Fine. The yellowed color looks "historic", the whitish color looks "modern" (because oil-based finish yellows the wood and water-based poly doesn't) but both are legitimate. And as I say, variation in color and pattern across the floor makes it look more like traditional wood floors, not messy.